#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00155/HGDP00155.cram --algo AlignmentStat HGDP/HGDP00155/QCmetrics/HGDP00155.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	420415050	420415050	1.000000	0	419426633	0.997649	62659885497	394493651	59230075034	57765635217	0.000000	0.005073	0.004446	0.000219	151.000000	417978152	0.996547	0	0.499860	0.019179	0.000006	
SECOND_OF_PAIR	420415050	420415050	1.000000	0	418017547	0.994297	61199729834	392163269	57957539712	53812855096	0.000000	0.011327	0.010692	0.000206	151.000000	417978152	0.999906	0	0.499617	0.020474	0.002025	
PAIR	840830100	840830100	1.000000	0	837444180	0.995973	123859615331	786656920	117187614746	111578490313	0.000000	0.008163	0.007535	0.000212	151.000000	835956304	0.998223	0	0.499739	0.019825	0.001016