#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00167/HGDP00167.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00167/QCmetrics/HGDP00167.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	19.194	24.32	16	3	0	0.094879	0.0039893	0.056401	0.0058579	0.30519	0.46632	0.99723	0.98752	0.90955	0.5943	0.22367	0.07734	0.048767	0.036098	0.028325	0.022608	0.019133	0.016771	0.014976	0.013646	0.98867	19	

coverage	high_quality_coverage_count	
0	65371
1	38092
2	45274
3	58524
4	87727
5	134076
6	208867
7	322431
8	482367
9	695292
10	957600
11	1248603
12	1531332
13	1773713
14	1940034
15	2000926
16	1956163
17	1818568
18	1613769
19	1370994
20	1112789
21	869340
22	653486
23	479284
24	343708
25	242071
26	168518
27	117607
28	84383
29	62782
30	48917
31	39993
32	34034
33	30787
34	27825
35	26143
36	24629
37	23362
38	22679
39	21071
40	20486
41	19905
42	19484
43	18616
44	18388
45	17996
46	17973
47	17227
48	17090
49	16551
50	15878
51	15752
52	14826
53	14356
54	13674
55	13117
56	12642
57	12211
58	11670
59	11020
60	10406
61	9770
62	9115
63	8680
64	8111
65	7829
66	7390
67	7199
68	6981
69	6643
70	6375
71	6286
72	5931
73	5970
74	5564
75	5515
76	5241
77	5131
78	4985
79	4840
80	4670
81	4558
82	4493
83	4511
84	4305
85	4121
86	4106
87	3983
88	3940
89	3736
90	3744
91	3480
92	3474
93	3283
94	3204
95	3086
96	2913
97	2882
98	2734
99	2627
100	2473
101	2385
102	2314
103	2260
104	2108
105	2089
106	1984
107	2044
108	1952
109	1936
110	1890
111	1946
112	1952
113	1857
114	1950
115	1916
116	1931
117	1787
118	1810
119	1802
120	1758
121	1774
122	1710
123	1636
124	1608
125	1665
126	1576
127	1521
128	1563
129	1593
130	1524
131	1516
132	1451
133	1525
134	1438
135	1511
136	1434
137	1353
138	1429
139	1339
140	1302
141	1254
142	1300
143	1241
144	1226
145	1192
146	1201
147	1194
148	1128
149	1154
150	1093
151	1169
152	1094
153	1073
154	1043
155	1027
156	977
157	964
158	1010
159	954
160	998
161	882
162	859
163	929
164	796
165	810
166	811
167	795
168	821
169	806
170	776
171	769
172	819
173	749
174	752
175	729
176	736
177	742
178	770
179	786
180	784
181	735
182	770
183	747
184	795
185	699
186	769
187	764
188	685
189	726
190	719
191	715
192	706
193	710
194	665
195	679
196	736
197	621
198	681
199	685
200	666
201	647
202	709
203	660
204	616
205	597
206	656
207	683
208	638
209	648
210	590
211	604
212	578
213	608
214	567
215	511
216	547
217	540
218	542
219	493
220	539
221	526
222	490
223	471
224	488
225	502
226	453
227	455
228	443
229	473
230	445
231	438
232	426
233	453
234	393
235	407
236	403
237	391
238	393
239	361
240	364
241	348
242	366
243	369
244	360
245	363
246	348
247	375
248	356
249	312
250	173507