#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00183/HGDP00183.cram --algo AlignmentStat HGDP/HGDP00183/QCmetrics/HGDP00183.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	439024393	439024393	1.000000	0	438341455	0.998444	65444032764	409334638	61430994223	59832037308	0.000000	0.005248	0.004463	0.000229	151.000000	436950299	0.996826	0	0.499981	0.021765	0.000006	
SECOND_OF_PAIR	439024393	439024393	1.000000	0	436989457	0.995365	63986246738	407131056	60171430861	56088984759	0.000000	0.010887	0.010098	0.000219	151.000000	436950299	0.999910	0	0.499638	0.023317	0.001330	
PAIR	878048786	878048786	1.000000	0	875330912	0.996905	129430279502	816465694	121602425084	115921022067	0.000000	0.008035	0.007251	0.000224	151.000000	873900598	0.998366	0	0.499810	0.022540	0.000668