#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00191/HGDP00191.cram --algo AlignmentStat HGDP/HGDP00191/QCmetrics/HGDP00191.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	424044097	424044097	1.000000	0	423133161	0.997852	62958318832	395124747	59147027553	57337183407	0.000000	0.005834	0.005074	0.000231	151.000000	421372694	0.995839	0	0.499747	0.022775	0.000009	
SECOND_OF_PAIR	424044097	424044097	1.000000	0	421426442	0.993827	61198931042	392503485	57594976568	53506827104	0.000000	0.011415	0.010667	0.000221	151.000000	421372694	0.999872	0	0.499581	0.025511	0.001778	
PAIR	848088194	848088194	1.000000	0	844559603	0.995839	124157249874	787628232	116742004121	110844010511	0.000000	0.008584	0.007833	0.000226	151.000000	842745388	0.997852	0	0.499664	0.024140	0.000894