#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00192/HGDP00192.cram --algo AlignmentStat HGDP/HGDP00192/QCmetrics/HGDP00192.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	449510847	449510847	1.000000	0	448916440	0.998678	66857765754	422129309	63161535120	61275637347	0.000000	0.005601	0.004977	0.000220	151.000000	447444441	0.996721	0	0.499915	0.018435	0.000004	
SECOND_OF_PAIR	449510847	449510847	1.000000	0	447487682	0.995499	65383336691	419881188	61866820552	57721766240	0.000000	0.010541	0.009893	0.000212	151.000000	447444441	0.999903	0	0.499645	0.019929	0.001049	
PAIR	899021694	899021694	1.000000	0	896404122	0.997088	132241102445	842010497	125028355672	118997403587	0.000000	0.008043	0.007409	0.000216	151.000000	894888882	0.998310	0	0.499780	0.019181	0.000526