#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00199/HGDP00199.cram --algo AlignmentStat HGDP/HGDP00199/QCmetrics/HGDP00199.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	388911452	388911452	1.000000	0	386712364	0.994346	57517201441	360489237	53941365373	52406024890	0.000000	0.006005	0.005175	0.000230	151.000000	385042977	0.995683	0	0.500036	0.022689	0.000008	
SECOND_OF_PAIR	388911452	388911452	1.000000	0	385116340	0.990242	55941911923	358077826	52565285935	49010669393	0.000000	0.011875	0.011058	0.000221	151.000000	385042977	0.999810	0	0.499519	0.024641	0.005243	
PAIR	777822904	777822904	1.000000	0	771828704	0.992294	113459113364	718567063	106506651308	101416694283	0.000000	0.008899	0.008078	0.000226	151.000000	770085954	0.997742	0	0.499778	0.023663	0.002625