#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00201/HGDP00201.cram --algo AlignmentStat HGDP/HGDP00201/QCmetrics/HGDP00201.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	424392365	424392365	1.000000	0	423981701	0.999032	63275407436	394956155	59263139353	57708232559	0.000000	0.005271	0.004468	0.000227	151.000000	422635811	0.996826	0	0.499921	0.022282	0.000003	
SECOND_OF_PAIR	424392365	424392365	1.000000	0	422668658	0.995938	61827679575	392817392	58031751590	54116933968	0.000000	0.010839	0.010032	0.000216	151.000000	422635811	0.999922	0	0.499684	0.024321	0.000742	
PAIR	848784730	848784730	1.000000	0	846650359	0.997485	125103087011	787773547	117294890943	111825166527	0.000000	0.008023	0.007220	0.000222	151.000000	845271622	0.998372	0	0.499803	0.023300	0.000373