#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00205/HGDP00205.cram --algo AlignmentStat HGDP/HGDP00205/QCmetrics/HGDP00205.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	396037320	396037320	1.000000	0	395265257	0.998051	58611664340	368619560	54966285677	53292229592	0.000000	0.005803	0.005048	0.000228	151.000000	393847413	0.996413	0	0.499883	0.020978	0.000005	
SECOND_OF_PAIR	396037320	396037320	1.000000	0	393900283	0.994604	57276374736	366446127	53806152496	50188460620	0.000000	0.010910	0.010131	0.000219	151.000000	393847413	0.999866	0	0.499553	0.022675	0.001501	
PAIR	792074640	792074640	1.000000	0	789165540	0.996327	115888039076	735065687	108772438173	103480690212	0.000000	0.008327	0.007562	0.000224	151.000000	787694826	0.998136	0	0.499718	0.021825	0.000753