#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00210/HGDP00210.cram --algo AlignmentStat HGDP/HGDP00210/QCmetrics/HGDP00210.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	535626727	535626727	1.000000	0	533486287	0.996004	79610591692	500434889	75081051332	73133137754	0.000000	0.005140	0.004481	0.000218	151.000000	531608508	0.996480	0	0.499943	0.019583	0.000015	
SECOND_OF_PAIR	535626727	535626727	1.000000	0	531691246	0.992653	77923157490	497596839	73629413404	69124678142	0.000000	0.010029	0.009353	0.000209	151.000000	531608508	0.999844	0	0.499637	0.021471	0.003567	
PAIR	1071253454	1071253454	1.000000	0	1065177533	0.994328	157533749182	998031728	148710464736	142257815896	0.000000	0.007558	0.006893	0.000213	151.000000	1063217016	0.998159	0	0.499790	0.020526	0.001791