#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00213/HGDP00213.cram --algo AlignmentStat HGDP/HGDP00213/QCmetrics/HGDP00213.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387453055	387453055	1.000000	0	386899758	0.998572	57693990432	361875420	54154990079	52008731405	0.000000	0.005367	0.004688	0.000207	151.000000	384734391	0.994403	0	0.494682	0.025541	0.000075	
SECOND_OF_PAIR	387453055	387453055	1.000000	0	384754722	0.993036	57065631964	359336408	53518995023	49871680741	0.000000	0.008067	0.007363	0.000205	151.000000	384734391	0.999947	0	0.494782	0.026161	0.000070	
PAIR	774906110	774906110	1.000000	0	771654480	0.995804	114759622396	721211828	107673985102	101880412146	0.000000	0.006709	0.006018	0.000206	151.000000	769468782	0.997168	0	0.494732	0.025850	0.000073