#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00237/HGDP00237.cram --algo AlignmentStat HGDP/HGDP00237/QCmetrics/HGDP00237.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	474301301	474301301	1.000000	0	472078707	0.995314	70320227590	442490607	66266215975	64285391429	0.000000	0.005662	0.004980	0.000221	151.000000	470510277	0.996678	0	0.499818	0.020167	0.000011	
SECOND_OF_PAIR	474301301	474301301	1.000000	0	470596481	0.992189	68607784411	440056349	64763324279	60498735500	0.000000	0.010633	0.009943	0.000214	151.000000	470510277	0.999817	0	0.499607	0.021904	0.004249	
PAIR	948602602	948602602	1.000000	0	942675188	0.993751	138928012001	882546956	131029540254	124784126929	0.000000	0.008116	0.007433	0.000217	151.000000	941020554	0.998245	0	0.499713	0.021035	0.002130