#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00239/HGDP00239.cram --algo AlignmentStat HGDP/HGDP00239/QCmetrics/HGDP00239.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	430809086	430809086	1.000000	0	429501681	0.996965	63933752588	402784657	60267126227	58506276180	0.000000	0.005644	0.004941	0.000231	151.000000	428325564	0.997262	0	0.499930	0.021185	0.000011	
SECOND_OF_PAIR	430809086	430809086	1.000000	0	428384165	0.994371	62622918674	400871067	59133459450	55408945247	0.000000	0.010047	0.009331	0.000221	151.000000	428325564	0.999863	0	0.499640	0.022975	0.002686	
PAIR	861618172	861618172	1.000000	0	857885846	0.995668	126556671262	803655724	119400585677	113915221427	0.000000	0.007823	0.007115	0.000226	151.000000	856651128	0.998561	0	0.499785	0.022079	0.001349