#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00241/HGDP00241.cram --algo AlignmentStat HGDP/HGDP00241/QCmetrics/HGDP00241.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	406766403	406766403	1.000000	0	402402377	0.989271	60034399952	375650913	56350734297	54898431085	0.000000	0.005246	0.004445	0.000231	151.000000	401152249	0.996893	0	0.500011	0.022446	0.000017	
SECOND_OF_PAIR	406766403	406766403	1.000000	0	401304612	0.986573	58785521385	373707642	55267234012	51760076195	0.000000	0.010630	0.009815	0.000221	151.000000	401152249	0.999620	0	0.499508	0.024282	0.010036	
PAIR	813532806	813532806	1.000000	0	803706989	0.987922	118819921337	749358555	111617968309	106658507280	0.000000	0.007909	0.007104	0.000226	151.000000	802304498	0.998255	0	0.499760	0.023363	0.005027