#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00247/HGDP00247.cram --algo AlignmentStat HGDP/HGDP00247/QCmetrics/HGDP00247.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	388761320	388761320	1.000000	0	387255061	0.996125	57436896374	362734341	54100435163	52467020128	0.000000	0.005641	0.004987	0.000225	151.000000	386060183	0.996914	0	0.499855	0.019922	0.000013	
SECOND_OF_PAIR	388761320	388761320	1.000000	0	386134456	0.993243	56224309134	360842809	53049617625	49621477840	0.000000	0.010378	0.009700	0.000215	151.000000	386060183	0.999808	0	0.499599	0.021426	0.003314	
PAIR	777522640	777522640	1.000000	0	773389517	0.994684	113661205508	723577150	107150052788	102088497968	0.000000	0.007984	0.007320	0.000220	151.000000	772120366	0.998359	0	0.499727	0.020673	0.001664