#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00262/HGDP00262.cram --algo AlignmentStat HGDP/HGDP00262/QCmetrics/HGDP00262.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	459045617	459045617	1.000000	0	454723034	0.990584	67642972015	423636651	63386906408	61607585988	0.000000	0.005911	0.005128	0.000231	151.000000	452666805	0.995478	0	0.499962	0.021999	0.000012	
SECOND_OF_PAIR	459045617	459045617	1.000000	0	452796846	0.986387	65714838138	420684447	61704282047	57484957051	0.000000	0.011953	0.011166	0.000221	151.000000	452666805	0.999713	0	0.499568	0.024222	0.008841	
PAIR	918091234	918091234	1.000000	0	907519880	0.988486	133357810153	844321098	125091188455	119092543039	0.000000	0.008888	0.008106	0.000226	151.000000	905333610	0.997591	0	0.499766	0.023109	0.004426