#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00264/HGDP00264.cram --algo AlignmentStat HGDP/HGDP00264/QCmetrics/HGDP00264.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	451382613	451382613	1.000000	0	450484918	0.998011	67208150950	419717503	62980443209	61394131729	0.000000	0.005183	0.004362	0.000234	151.000000	449378026	0.997543	0	0.499972	0.023543	0.000005	
SECOND_OF_PAIR	451382613	451382613	1.000000	0	449424703	0.995662	65817523867	417833766	61819184959	58059578971	0.000000	0.009988	0.009159	0.000223	151.000000	449378026	0.999896	0	0.499606	0.025889	0.001743	
PAIR	902765226	902765226	1.000000	0	899909621	0.996837	133025674817	837551269	124799628168	119453710700	0.000000	0.007560	0.006738	0.000228	151.000000	898756052	0.998718	0	0.499789	0.024715	0.000874