#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00281/HGDP00281.cram --algo AlignmentStat HGDP/HGDP00281/QCmetrics/HGDP00281.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	402299011	402299011	1.000000	0	399282609	0.992502	59442356689	368472371	55247333486	53725736290	0.000000	0.005688	0.004705	0.000247	151.000000	396984409	0.994244	0	0.499883	0.026938	0.000018	
SECOND_OF_PAIR	402299011	402299011	1.000000	0	397094961	0.987064	57635503896	365242149	53648872954	49368974772	0.000000	0.013201	0.012272	0.000235	151.000000	396984409	0.999722	0	0.499564	0.028957	0.006938	
PAIR	804598022	804598022	1.000000	0	796377570	0.989783	117077860585	733714520	108896206440	103094711062	0.000000	0.009386	0.008432	0.000241	151.000000	793968818	0.996975	0	0.499724	0.027945	0.003478