#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00285/HGDP00285.cram --algo AlignmentStat HGDP/HGDP00285/QCmetrics/HGDP00285.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	421217735	421217735	1.000000	0	419576799	0.996104	62464162746	392697910	58774132936	57132180047	0.000000	0.005802	0.005079	0.000221	151.000000	417590084	0.995265	0	0.500034	0.019907	0.000006	
SECOND_OF_PAIR	421217735	421217735	1.000000	0	417653137	0.991537	60693052990	389879395	57210705935	53254991778	0.000000	0.011998	0.011272	0.000212	151.000000	417590084	0.999849	0	0.499529	0.021770	0.003523	
PAIR	842435470	842435470	1.000000	0	837229936	0.993821	123157215736	782577305	115984838871	110387171825	0.000000	0.008855	0.008134	0.000217	151.000000	835180168	0.997552	0	0.499782	0.020837	0.001765