#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00302/HGDP00302.cram --algo AlignmentStat HGDP/HGDP00302/QCmetrics/HGDP00302.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	424355159	424355159	1.000000	0	423994828	0.999151	63373525176	396975740	59609795617	58358045434	0.000000	0.004692	0.004001	0.000221	151.000000	422683173	0.996906	0	0.499926	0.020182	0.000003	
SECOND_OF_PAIR	424355159	424355159	1.000000	0	422721943	0.996151	62195861061	394844419	58614152907	55601739876	0.000000	0.008912	0.008171	0.000212	151.000000	422683173	0.999908	0	0.499623	0.022055	0.000550	
PAIR	848710318	848710318	1.000000	0	846716771	0.997651	125569386237	791820159	118223948524	113959785310	0.000000	0.006782	0.006068	0.000216	151.000000	845366346	0.998405	0	0.499775	0.021117	0.000276