#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00313/HGDP00313.cram --algo AlignmentStat HGDP/HGDP00313/QCmetrics/HGDP00313.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	413977974	413977974	1.000000	0	413338376	0.998455	61494250857	385362031	57680347797	56042857909	0.000000	0.005934	0.005125	0.000231	151.000000	411566598	0.995713	0	0.499850	0.021944	0.000005	
SECOND_OF_PAIR	413977974	413977974	1.000000	0	411609346	0.994278	59834721930	382820081	56235630380	52415514435	0.000000	0.011823	0.011024	0.000220	151.000000	411566598	0.999896	0	0.499676	0.023498	0.001192	
PAIR	827955948	827955948	1.000000	0	824947722	0.996367	121328972787	768182112	113915978177	108458372344	0.000000	0.008838	0.008037	0.000225	151.000000	823133196	0.997800	0	0.499763	0.022720	0.000598