#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00321/HGDP00321.cram --algo AlignmentStat HGDP/HGDP00321/QCmetrics/HGDP00321.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	338052921	338052921	1.000000	0	337952732	0.999704	50538729981	316582251	47479341359	45525158071	0.000000	0.005239	0.004626	0.000205	151.000000	337272095	0.997986	0	0.499133	0.017059	0.000083	
SECOND_OF_PAIR	338052921	338052921	1.000000	0	337288998	0.997740	49669897033	315634832	46657259168	43727645199	0.000000	0.008318	0.007713	0.000207	151.000000	337272095	0.999950	0	0.499188	0.017797	0.000079	
PAIR	676105842	676105842	1.000000	0	675241730	0.998722	100208627014	632217083	94136600527	89252803270	0.000000	0.006765	0.006156	0.000206	151.000000	674544190	0.998967	0	0.499160	0.017428	0.000081