#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00330/HGDP00330.cram --algo AlignmentStat HGDP/HGDP00330/QCmetrics/HGDP00330.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	355672007	355672007	1.000000	0	355396250	0.999225	53066115526	332545343	49906136619	48616409238	0.000000	0.005165	0.004440	0.000215	151.000000	354137423	0.996458	0	0.499936	0.019449	0.000002	
SECOND_OF_PAIR	355672007	355672007	1.000000	0	354166450	0.995767	51977870330	330648480	48968894698	46007378222	0.000000	0.010000	0.009247	0.000207	151.000000	354137423	0.999918	0	0.499608	0.021025	0.000476	
PAIR	711344014	711344014	1.000000	0	709562700	0.997496	105043985856	663193823	98875031317	94623787460	0.000000	0.007557	0.006820	0.000211	151.000000	708274846	0.998185	0	0.499772	0.020236	0.000239