#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00341/HGDP00341.cram --algo AlignmentStat HGDP/HGDP00341/QCmetrics/HGDP00341.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369492102	369492102	1.000000	0	369103904	0.998949	55035262931	344947721	51638220098	49675070363	0.000000	0.004907	0.004241	0.000215	151.000000	366297980	0.992398	0	0.497523	0.020799	0.000086	
SECOND_OF_PAIR	369492102	369492102	1.000000	0	366316926	0.991407	54542278978	342197125	51173232292	48304672537	0.000000	0.006810	0.006138	0.000212	151.000000	366297980	0.999948	0	0.497798	0.021466	0.000081	
PAIR	738984204	738984204	1.000000	0	735420830	0.995178	109577541909	687144846	102811452390	97979742900	0.000000	0.005854	0.005185	0.000214	151.000000	732595960	0.996159	0	0.497660	0.021131	0.000083