#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00356/HGDP00356.cram --algo AlignmentStat HGDP/HGDP00356/QCmetrics/HGDP00356.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	403320206	403320206	1.000000	0	403058581	0.999351	60129889714	377377852	56583421158	54940981618	0.000000	0.005535	0.004858	0.000220	151.000000	401669463	0.996554	0	0.499957	0.019721	0.000001	
SECOND_OF_PAIR	403320206	403320206	1.000000	0	401700139	0.995983	58786065626	375273719	55451542075	51708569732	0.000000	0.010484	0.009776	0.000209	151.000000	401669463	0.999924	0	0.499494	0.021387	0.000369	
PAIR	806640412	806640412	1.000000	0	804758720	0.997667	118915955340	752651571	112034963233	106649551350	0.000000	0.007982	0.007292	0.000214	151.000000	803338926	0.998236	0	0.499726	0.020553	0.000185