#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00364/HGDP00364.cram --algo AlignmentStat HGDP/HGDP00364/QCmetrics/HGDP00364.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	426153649	426153649	1.000000	0	425901532	0.999408	63481574607	398000909	59640684411	58182492864	0.000000	0.005257	0.004494	0.000226	151.000000	423955351	0.995430	0	0.499796	0.021198	0.000001	
SECOND_OF_PAIR	426153649	426153649	1.000000	0	423991001	0.994925	61909178927	395266954	58283713743	54446162551	0.000000	0.010853	0.010064	0.000217	151.000000	423955351	0.999916	0	0.499678	0.022820	0.000267	
PAIR	852307298	852307298	1.000000	0	849892533	0.997167	125390753534	793267863	117924398154	112628655415	0.000000	0.008019	0.007247	0.000221	151.000000	847910702	0.997668	0	0.499737	0.022007	0.000134