#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00372/HGDP00372.cram --algo AlignmentStat HGDP/HGDP00372/QCmetrics/HGDP00372.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	420809424	420809424	1.000000	0	420596087	0.999493	62408858328	392237746	58486416391	56495144578	0.000000	0.006215	0.005518	0.000224	151.000000	418884488	0.995931	0	0.499797	0.020379	0.000001	
SECOND_OF_PAIR	420809424	420809424	1.000000	0	418919125	0.995508	60920524307	389734773	57222209368	52872489226	0.000000	0.011936	0.011186	0.000212	151.000000	418884488	0.999917	0	0.499699	0.021767	0.000207	
PAIR	841618848	841618848	1.000000	0	839515212	0.997500	123329382635	781972519	115708625759	109367633804	0.000000	0.009040	0.008321	0.000218	151.000000	837768976	0.997920	0	0.499748	0.021072	0.000104