#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00376/HGDP00376.cram --algo AlignmentStat HGDP/HGDP00376/QCmetrics/HGDP00376.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	408891314	408891314	1.000000	0	408701592	0.999536	60988341977	382551668	57382741512	56122915122	0.000000	0.005360	0.004639	0.000225	151.000000	407195757	0.996316	0	0.499924	0.021039	0.000001	
SECOND_OF_PAIR	408891314	408891314	1.000000	0	407222411	0.995918	59664339537	380281368	56254527442	52912672675	0.000000	0.010248	0.009491	0.000214	151.000000	407195757	0.999935	0	0.499617	0.023052	0.000224	
PAIR	817782628	817782628	1.000000	0	815924003	0.997727	120652681514	762833036	113637268954	109035587797	0.000000	0.007777	0.007041	0.000219	151.000000	814391514	0.998122	0	0.499771	0.022044	0.000112