#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00402/HGDP00402.cram --algo AlignmentStat HGDP/HGDP00402/QCmetrics/HGDP00402.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	467640432	467640432	1.000000	0	465611356	0.995661	69283009385	435767452	65188047825	63310961968	0.000000	0.005720	0.004954	0.000236	151.000000	464407810	0.997415	0	0.499918	0.022303	0.000016	
SECOND_OF_PAIR	467640432	467640432	1.000000	0	464488591	0.993260	67890688670	433739922	63978609643	60083234220	0.000000	0.009889	0.009098	0.000227	151.000000	464407810	0.999826	0	0.499621	0.024621	0.003926	
PAIR	935280864	935280864	1.000000	0	930099947	0.994461	137173698055	869507374	129166657468	123394196188	0.000000	0.007783	0.007006	0.000232	151.000000	928815620	0.998619	0	0.499769	0.023461	0.001971