#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00407/HGDP00407.cram --algo AlignmentStat HGDP/HGDP00407/QCmetrics/HGDP00407.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	440667310	440667310	1.000000	0	439985663	0.998453	65684825543	410292271	61562956870	60025239358	0.000000	0.005126	0.004359	0.000226	151.000000	438930421	0.997602	0	0.499962	0.021585	0.000004	
SECOND_OF_PAIR	440667310	440667310	1.000000	0	438978600	0.996168	64528873742	408518899	60583175642	57228714216	0.000000	0.009497	0.008696	0.000218	151.000000	438930421	0.999890	0	0.499562	0.023252	0.001290	
PAIR	881334620	881334620	1.000000	0	878964263	0.997310	130213699285	818811170	122146132512	117253953574	0.000000	0.007292	0.006510	0.000222	151.000000	877860842	0.998745	0	0.499763	0.022418	0.000647