#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00433/HGDP00433.cram --algo AlignmentStat HGDP/HGDP00433/QCmetrics/HGDP00433.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	436362661	436362661	1.000000	0	435066225	0.997029	65010604275	406923598	61103205061	59798160907	0.000000	0.004846	0.004120	0.000228	151.000000	433880980	0.997276	0	0.499938	0.020654	0.000008	
SECOND_OF_PAIR	436362661	436362661	1.000000	0	433954356	0.994481	63851170908	404951642	60124591179	57029507612	0.000000	0.008988	0.008217	0.000218	151.000000	433880980	0.999831	0	0.499594	0.022430	0.002551	
PAIR	872725322	872725322	1.000000	0	869020581	0.995755	128861775183	811875240	121227796240	116827668519	0.000000	0.006898	0.006152	0.000223	151.000000	867761960	0.998552	0	0.499766	0.021541	0.001279