#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00455/HGDP00455.cram --algo AlignmentStat HGDP/HGDP00455/QCmetrics/HGDP00455.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	454545231	454545231	1.000000	0	454356479	0.999585	67920781997	424351995	63724843630	62285013445	0.000000	0.004973	0.004224	0.000254	151.000000	452456252	0.995818	0	0.500005	0.019812	0.000001	
SECOND_OF_PAIR	454545231	454545231	1.000000	0	452483898	0.995465	66503650840	421669802	62500739957	58815750055	0.000000	0.009994	0.009208	0.000242	151.000000	452456252	0.999939	0	0.499456	0.020963	0.000261	
PAIR	909090462	909090462	1.000000	0	906840377	0.997525	134424432837	846021797	126225583587	121100763500	0.000000	0.007457	0.006692	0.000248	151.000000	904912504	0.997874	0	0.499731	0.020386	0.000131