#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00459/HGDP00459.cram --algo AlignmentStat HGDP/HGDP00459/QCmetrics/HGDP00459.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	359140458	359140458	1.000000	0	356112764	0.991570	53219749752	330699000	49644131355	47995491252	0.000000	0.005109	0.004236	0.000258	151.000000	355130429	0.997242	0	0.496372	0.025147	0.000805	
SECOND_OF_PAIR	359140458	359140458	1.000000	0	355199783	0.989027	52917985112	329787722	49391666725	46930034634	1.000000	0.009519	0.008706	0.000249	151.000000	355130429	0.999805	0	0.497379	0.025661	0.000757	
PAIR	718280916	718280916	1.000000	0	711312547	0.990299	106137734864	660486722	99035798080	94925525886	0.000000	0.007308	0.006465	0.000254	151.000000	710260858	0.998521	0	0.496875	0.025404	0.000781