#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00463/HGDP00463.cram --algo AlignmentStat HGDP/HGDP00463/QCmetrics/HGDP00463.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379879647	379879647	1.000000	0	379239696	0.998315	56696619559	353273999	53004561925	51138497682	0.000000	0.005175	0.004419	0.000250	151.000000	374270344	0.986897	0	0.494985	0.027884	0.001433	
SECOND_OF_PAIR	379879647	379879647	1.000000	0	374335471	0.985405	55057507532	348043915	51475979160	47926861107	0.000000	0.009002	0.008243	0.000243	151.000000	374270344	0.999826	0	0.495126	0.028753	0.001338	
PAIR	759759294	759759294	1.000000	0	753575167	0.991860	111754127091	701317914	104480541085	99065358789	0.000000	0.007061	0.006303	0.000247	151.000000	748540688	0.993319	0	0.495055	0.028316	0.001386