#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00464/HGDP00464.cram --algo AlignmentStat HGDP/HGDP00464/QCmetrics/HGDP00464.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	359116381	359116381	1.000000	0	358313007	0.997763	53566941627	332786125	49942629802	48297150874	0.000000	0.004936	0.004121	0.000251	151.000000	357781187	0.998516	0	0.496525	0.024212	0.001712	
SECOND_OF_PAIR	359116381	359116381	1.000000	0	357842515	0.996453	53311800484	332075624	49701973442	47329176359	0.000000	0.006466	0.005649	0.000245	151.000000	357781187	0.999829	0	0.496799	0.024759	0.001620	
PAIR	718232762	718232762	1.000000	0	716155522	0.997108	106878742111	664861749	99644603244	95626327233	0.000000	0.005699	0.004883	0.000248	151.000000	715562374	0.999172	0	0.496662	0.024485	0.001666