#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00465/HGDP00465.cram --algo AlignmentStat HGDP/HGDP00465/QCmetrics/HGDP00465.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	356630435	356630435	1.000000	0	355693153	0.997372	53174093604	331218338	49712456766	48084735195	0.000000	0.004824	0.004014	0.000251	151.000000	354679595	0.997150	0	0.496953	0.024551	0.002150	
SECOND_OF_PAIR	356630435	356630435	1.000000	0	354759162	0.994753	52669062510	330068576	49245696133	46814544179	0.000000	0.006644	0.005835	0.000245	151.000000	354679595	0.999776	0	0.497455	0.025285	0.002026	
PAIR	713260870	713260870	1.000000	0	710452315	0.996062	105843156114	661286914	98958152899	94899279374	0.000000	0.005729	0.004920	0.000248	151.000000	709359190	0.998461	0	0.497203	0.024917	0.002088