#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00469/HGDP00469.cram --algo AlignmentStat HGDP/HGDP00469/QCmetrics/HGDP00469.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	392115150	392115150	1.000000	0	391689474	0.998914	58191974819	363851224	54410034144	52928744927	0.000000	0.005309	0.004497	0.000249	151.000000	390569681	0.997141	0	0.500084	0.027979	0.000065	
SECOND_OF_PAIR	392115150	392115150	1.000000	0	390605953	0.996151	57360144182	362000359	53696747445	50581872485	0.000000	0.009056	0.008200	0.000234	151.000000	390569681	0.999907	0	0.499583	0.028701	0.000065	
PAIR	784230300	784230300	1.000000	0	782295427	0.997533	115552119001	725851583	108106781589	103510617412	0.000000	0.007169	0.006336	0.000241	151.000000	781139362	0.998522	0	0.499834	0.028339	0.000065