#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00478/HGDP00478.cram --algo AlignmentStat HGDP/HGDP00478/QCmetrics/HGDP00478.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	406021449	406021449	1.000000	0	405670058	0.999135	60544635001	378194622	56658800064	54376838831	0.000000	0.005677	0.004947	0.000239	151.000000	403783531	0.995350	0	0.499079	0.020095	0.000565	
SECOND_OF_PAIR	406021449	406021449	1.000000	0	403849384	0.994650	59227571089	375947769	55421903839	50906670705	0.000000	0.009547	0.008843	0.000231	151.000000	403783531	0.999837	0	0.498922	0.020596	0.000510	
PAIR	812042898	812042898	1.000000	0	809519442	0.996892	119772206090	754142391	112080703903	105283509536	0.000000	0.007591	0.006873	0.000235	151.000000	807567062	0.997588	0	0.499001	0.020345	0.000538