#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00511/HGDP00511.cram --algo AlignmentStat HGDP/HGDP00511/QCmetrics/HGDP00511.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	397008032	397008032	1.000000	0	395679150	0.996653	59010533216	368325282	55277458963	53894681756	0.000000	0.005300	0.004452	0.000236	151.000000	394016822	0.995799	0	0.499850	0.024490	0.000006	
SECOND_OF_PAIR	397008032	397008032	1.000000	0	394050573	0.992551	57385692870	365742252	53868024893	49713982123	0.000000	0.012494	0.011681	0.000222	151.000000	394016822	0.999914	0	0.499502	0.027194	0.001675	
PAIR	794016064	794016064	1.000000	0	789729723	0.994602	116396226086	734067534	109145483856	103608663879	0.000000	0.008847	0.008019	0.000229	151.000000	788033644	0.997852	0	0.499677	0.025840	0.000841