#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00512/HGDP00512.cram --algo AlignmentStat HGDP/HGDP00512/QCmetrics/HGDP00512.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	381256665	381256665	1.000000	0	379793225	0.996162	56691023214	354203257	53167785240	51897521087	0.000000	0.005286	0.004505	0.000227	151.000000	378209185	0.995829	0	0.499863	0.021570	0.000016	
SECOND_OF_PAIR	381256665	381256665	1.000000	0	378255939	0.992129	55175974361	351766526	51865288826	47897800944	1.000000	0.012605	0.011827	0.000213	151.000000	378209185	0.999876	0	0.499607	0.023594	0.003407	
PAIR	762513330	762513330	1.000000	0	758049164	0.994145	111866997575	705969783	105033074066	99795322031	0.000000	0.008896	0.008120	0.000220	151.000000	756418370	0.997849	0	0.499735	0.022580	0.001711