#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00514/HGDP00514.cram --algo AlignmentStat HGDP/HGDP00514/QCmetrics/HGDP00514.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	398567849	398567849	1.000000	0	397604030	0.997582	59320329038	372682579	55905817833	54324092598	0.000000	0.005471	0.004802	0.000218	151.000000	394551415	0.992322	0	0.500044	0.020656	0.000008	
SECOND_OF_PAIR	398567849	398567849	1.000000	0	394590482	0.990021	57089406064	368506594	53897307330	48740234901	1.000000	0.015089	0.014472	0.000204	151.000000	394551415	0.999901	0	0.499400	0.022246	0.002123	
PAIR	797135698	797135698	1.000000	0	792194512	0.993801	116409735102	741189173	109803125163	103064327499	0.000000	0.010187	0.009548	0.000211	151.000000	789102830	0.996097	0	0.499723	0.021448	0.001065