#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP00514/HGDP00514.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00514/QCmetrics/HGDP00514.WgsMetrics.chrX.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
152114341	31.327	8.0715	31	4	0	0.091024	0.0036261	0.055069	0.0021528	0.00014614	0.15202	0.999	0.99673	0.99287	0.98457	0.95644	0.8505	0.60538	0.10712	0.0095304	0.0036963	0.0022028	0.0014275	0.00098991	0.00070822	0.99799	27	

coverage	high_quality_coverage_count	
0	151865
1	93702
2	81249
3	82760
4	87234
5	94307
6	102420
7	114698
8	128741
9	146987
10	169791
11	198632
12	238939
13	292505
14	362581
15	460773
16	594590
17	785714
18	1047866
19	1390638
20	1845334
21	2420992
22	3115225
23	3917944
24	4816355
25	5757175
26	6692255
27	7573809
28	8333028
29	8928974
30	9300965
31	9437167
32	9324283
33	8980398
34	8440565
35	7743405
36	6935400
37	6074363
38	5200583
39	4355906
40	3571988
41	2875257
42	2270648
43	1763728
44	1345984
45	1011796
46	750537
47	554021
48	405198
49	295356
50	216468
51	159484
52	120504
53	92209
54	72730
55	59523
56	50204
57	43398
58	38647
59	34283
60	31058
61	28355
62	26402
63	24334
64	22747
65	21416
66	19931
67	18935
68	17568
69	16434
70	15479
71	14425
72	13511
73	12522
74	11699
75	11060
76	10559
77	10111
78	9604
79	8970
80	8407
81	7810
82	7533
83	7132
84	6748
85	6235
86	5996
87	5821
88	5441
89	5437
90	5205
91	4955
92	4754
93	4458
94	4273
95	4066
96	4007
97	3785
98	3775
99	3572
100	3530
101	3272
102	3115
103	2950
104	2804
105	2741
106	2634
107	2527
108	2353
109	2336
110	2123
111	2152
112	2004
113	1942
114	1884
115	1803
116	1749
117	1659
118	1501
119	1516
120	1422
121	1324
122	1290
123	1135
124	1192
125	1144
126	1067
127	1111
128	1112
129	1018
130	1021
131	885
132	898
133	860
134	861
135	829
136	768
137	662
138	765
139	671
140	652
141	631
142	648
143	563
144	565
145	553
146	574
147	553
148	529
149	550
150	497
151	525
152	478
153	490
154	495
155	458
156	489
157	432
158	441
159	429
160	439
161	456
162	429
163	375
164	385
165	408
166	380
167	406
168	394
169	370
170	346
171	367
172	353
173	345
174	332
175	333
176	303
177	344
178	317
179	318
180	312
181	303
182	285
183	289
184	294
185	301
186	265
187	285
188	316
189	301
190	266
191	305
192	276
193	249
194	281
195	267
196	264
197	265
198	241
199	248
200	248
201	242
202	250
203	221
204	218
205	204
206	225
207	202
208	202
209	189
210	212
211	172
212	182
213	186
214	178
215	186
216	176
217	161
218	175
219	161
220	162
221	183
222	189
223	186
224	166
225	157
226	177
227	162
228	175
229	152
230	165
231	154
232	166
233	158
234	151
235	144
236	132
237	139
238	124
239	123
240	146
241	116
242	114
243	145
244	129
245	127
246	123
247	125
248	114
249	124
250	9117