#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00515/HGDP00515.cram --algo AlignmentStat HGDP/HGDP00515/QCmetrics/HGDP00515.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	412586719	412586719	1.000000	0	411258158	0.996780	61338339417	384246482	57610065953	55976244767	0.000000	0.005637	0.004894	0.000216	151.000000	409520623	0.995775	0	0.499912	0.019979	0.000011	
SECOND_OF_PAIR	412586719	412586719	1.000000	0	409571596	0.992692	59774993750	381677075	56254911312	51841281978	0.000000	0.012448	0.011711	0.000204	151.000000	409520623	0.999876	0	0.499557	0.021212	0.002839	
PAIR	825173438	825173438	1.000000	0	820829754	0.994736	121113333167	765923557	113864977265	107817526745	0.000000	0.008999	0.008262	0.000210	151.000000	819041246	0.997821	0	0.499735	0.020594	0.001425