#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00515/HGDP00515.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00515/QCmetrics/HGDP00515.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 20.183 24.535 17 3 0 0.085248 0.002094 0.06635 0.0090227 0.30442 0.46714 0.99922 0.99564 0.94812 0.67817 0.28077 0.090477 0.048758 0.032267 0.025203 0.021234 0.01838 0.016271 0.014777 0.01382 0.99441 23 coverage high_quality_coverage_count 0 18530 1 13440 2 16310 3 21595 4 33165 5 56888 6 101648 7 179822 8 302879 9 482029 10 712298 11 988636 12 1288282 13 1577204 14 1814073 15 1969609 16 2018029 17 1965577 18 1824736 19 1615194 20 1367773 21 1111455 22 870834 23 661350 24 486461 25 350477 26 246844 27 173802 28 123984 29 90966 30 68742 31 55519 32 46254 33 40210 34 36114 35 33012 36 30731 37 28682 38 26404 39 24122 40 22587 41 20835 42 19351 43 18127 44 16725 45 15914 46 14683 47 13920 48 12919 49 11918 50 11164 51 10591 52 10222 53 9865 54 9335 55 9032 56 8843 57 8564 58 8233 59 7958 60 7666 61 7562 62 7305 63 7034 64 6963 65 6520 66 6365 67 6287 68 6022 69 5718 70 5547 71 5430 72 5295 73 5145 74 5087 75 4849 76 4826 77 4621 78 4557 79 4507 80 4309 81 4104 82 3834 83 3715 84 3559 85 3270 86 3326 87 3207 88 3022 89 2962 90 2740 91 2532 92 2421 93 2411 94 2241 95 2179 96 2132 97 2020 98 1954 99 1981 100 1986 101 1784 102 1811 103 1861 104 1798 105 1822 106 1758 107 1644 108 1685 109 1674 110 1618 111 1565 112 1566 113 1540 114 1597 115 1483 116 1525 117 1552 118 1524 119 1520 120 1468 121 1516 122 1496 123 1462 124 1449 125 1476 126 1445 127 1494 128 1475 129 1442 130 1413 131 1320 132 1386 133 1319 134 1303 135 1339 136 1286 137 1294 138 1245 139 1260 140 1206 141 1206 142 1184 143 1099 144 1142 145 1085 146 1100 147 1078 148 1066 149 1010 150 975 151 983 152 973 153 944 154 939 155 940 156 950 157 912 158 898 159 851 160 862 161 926 162 893 163 870 164 898 165 863 166 873 167 851 168 865 169 883 170 890 171 855 172 872 173 875 174 860 175 814 176 810 177 816 178 807 179 812 180 827 181 789 182 796 183 813 184 757 185 745 186 767 187 659 188 760 189 776 190 730 191 699 192 792 193 691 194 742 195 730 196 775 197 717 198 726 199 726 200 731 201 729 202 734 203 731 204 722 205 734 206 760 207 770 208 703 209 662 210 696 211 744 212 676 213 680 214 671 215 660 216 636 217 684 218 657 219 665 220 624 221 653 222 656 223 630 224 624 225 600 226 576 227 564 228 605 229 511 230 554 231 568 232 509 233 557 234 494 235 509 236 492 237 462 238 504 239 476 240 430 241 453 242 447 243 403 244 454 245 390 246 356 247 394 248 372 249 400 250 183398