#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00516/HGDP00516.cram --algo AlignmentStat HGDP/HGDP00516/QCmetrics/HGDP00516.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	386222125	386222125	1.000000	0	384212615	0.994797	57356390105	360596455	54091503290	52629791864	0.000000	0.005203	0.004593	0.000211	151.000000	382785225	0.996285	0	0.499965	0.018145	0.000022	
SECOND_OF_PAIR	386222125	386222125	1.000000	0	382843621	0.991252	55902383969	358406979	52824087781	48788811400	0.000000	0.011843	0.011221	0.000201	151.000000	382785225	0.999847	0	0.499570	0.019394	0.004743	
PAIR	772444250	772444250	1.000000	0	767056236	0.993025	113258774074	719003434	106915591071	101418603264	0.000000	0.008480	0.007867	0.000206	151.000000	765570450	0.998063	0	0.499768	0.018768	0.002382