#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00516/HGDP00516.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00516/QCmetrics/HGDP00516.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 30.926 10.501 30 4 0 0.13501 0.0017652 0.046568 0.0035768 0.013404 0.20033 0.99897 0.99644 0.99289 0.98524 0.95436 0.83044 0.56015 0.086864 0.011794 0.0068531 0.0048974 0.0037226 0.0029747 0.0024577 0.99786 27 coverage high_quality_coverage_count 0 2821139 1 1994381 2 1716750 3 1634955 4 1626672 5 1666631 6 1755810 7 1885567 8 2075328 9 2350933 10 2713900 11 3222204 12 3920826 13 4895440 14 6290774 15 8299783 16 11200647 17 15349038 18 21114254 19 28872820 20 38922278 21 51426191 22 66249535 23 82998377 24 100948901 25 119168302 26 136498371 27 151695309 28 163729613 29 171641529 30 174937342 31 173404474 32 167356039 33 157379191 34 144229708 35 128953766 36 112596380 37 96095596 38 80152892 39 65473157 40 52398544 41 41147274 42 31705495 43 24040492 44 17969250 45 13266175 46 9713014 47 7082874 48 5164745 49 3804190 50 2843251 51 2177237 52 1718041 53 1400456 54 1180344 55 1025586 56 913532 57 832167 58 767612 59 718159 60 674434 61 636768 62 605111 63 572680 64 543117 65 518286 66 492149 67 466739 68 444268 69 420791 70 400526 71 380686 72 360833 73 343482 74 325880 75 310933 76 296322 77 282111 78 269835 79 257509 80 246211 81 235288 82 226304 83 215765 84 208158 85 199402 86 191311 87 184432 88 177574 89 170761 90 163211 91 158576 92 154420 93 148956 94 143447 95 138642 96 134534 97 130754 98 125966 99 122226 100 118131 101 114362 102 110856 103 108219 104 104775 105 102003 106 98307 107 95581 108 92896 109 90370 110 87801 111 85413 112 82933 113 80089 114 78106 115 76200 116 73739 117 71486 118 69702 119 67509 120 65457 121 64297 122 62023 123 60368 124 58659 125 57852 126 56091 127 54845 128 53652 129 52477 130 51548 131 51017 132 49654 133 48962 134 48208 135 47310 136 46372 137 45605 138 45109 139 43733 140 43179 141 42212 142 41877 143 40603 144 40016 145 39470 146 38909 147 38389 148 37376 149 36519 150 36192 151 35627 152 34861 153 34076 154 33872 155 33412 156 32615 157 32292 158 31689 159 31039 160 30452 161 29980 162 29427 163 28735 164 28409 165 28214 166 27185 167 26962 168 26433 169 25982 170 25539 171 25045 172 25130 173 24792 174 24143 175 24108 176 23352 177 22899 178 22538 179 22175 180 22030 181 21722 182 21481 183 21079 184 20791 185 20650 186 20448 187 19951 188 19997 189 19638 190 18978 191 18863 192 18631 193 18165 194 17920 195 17640 196 17226 197 17150 198 16823 199 16588 200 16260 201 16296 202 15746 203 15731 204 15746 205 15216 206 15044 207 14767 208 14495 209 14186 210 14217 211 13915 212 13651 213 13604 214 13715 215 13321 216 13275 217 12916 218 12945 219 12522 220 12282 221 12267 222 12050 223 12012 224 11718 225 11649 226 11458 227 11238 228 11236 229 11016 230 11026 231 10635 232 10552 233 10293 234 10384 235 10211 236 10095 237 10057 238 9809 239 9943 240 9634 241 9487 242 9544 243 9370 244 9293 245 9147 246 9082 247 8993 248 8958 249 8900 250 1640625