#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00517/HGDP00517.cram --algo AlignmentStat HGDP/HGDP00517/QCmetrics/HGDP00517.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	452303403	452303403	1.000000	0	451363717	0.997922	67296901112	424387316	63636804031	61812902001	0.000000	0.005573	0.004889	0.000221	151.000000	449665811	0.996238	0	0.499908	0.020544	0.000006	
SECOND_OF_PAIR	452303403	452303403	1.000000	0	449716082	0.994280	65674718165	421817299	62202677564	57454213579	0.000000	0.012221	0.011561	0.000209	151.000000	449665811	0.999888	0	0.499597	0.021892	0.001679	
PAIR	904606806	904606806	1.000000	0	901079799	0.996101	132971619277	846204615	125839481595	119267115580	0.000000	0.008856	0.008187	0.000215	151.000000	899331622	0.998060	0	0.499753	0.021217	0.000842