#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00518/HGDP00518.cram --algo AlignmentStat HGDP/HGDP00518/QCmetrics/HGDP00518.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	421882739	421882739	1.000000	0	420403477	0.996494	62791988535	392761459	58979141587	57531805068	0.000000	0.005157	0.004402	0.000215	151.000000	417964987	0.994200	0	0.499877	0.020247	0.000013	
SECOND_OF_PAIR	421882739	421882739	1.000000	0	418023150	0.990852	60816993961	389278406	57234588164	52310772284	1.000000	0.013849	0.013116	0.000204	151.000000	417964987	0.999861	0	0.499618	0.021857	0.003081	
PAIR	843765478	843765478	1.000000	0	838426627	0.993673	123608982496	782039865	116213729751	109842577352	0.000000	0.009433	0.008693	0.000210	151.000000	835929974	0.997022	0	0.499748	0.021050	0.001547