#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP00518/HGDP00518.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00518/QCmetrics/HGDP00518.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 16.982 5.3936 17 3 0 0.11793 0.0029362 0.048467 0.0020051 8.8445e-05 0.17143 0.99797 0.99025 0.94611 0.69499 0.28374 0.060483 0.0098348 0.0018689 0.00088009 0.00051323 0.00035028 0.00025898 0.00020122 0.00015862 0.9921 21 coverage high_quality_coverage_count 0 308428 1 261268 2 269021 3 295457 4 349495 5 466304 6 687880 7 1088562 8 1744660 9 2726703 10 4078296 11 5758505 12 7634331 13 9528756 14 11198276 15 12441120 16 13114098 17 13122794 18 12499831 19 11379383 20 9918234 21 8299826 22 6678650 23 5178950 24 3885194 25 2821195 26 1989390 27 1367508 28 920188 29 606023 30 395804 31 256844 32 168931 33 114950 34 79362 35 58129 36 45101 37 36274 38 30496 39 25835 40 23059 41 20626 42 18424 43 16469 44 15301 45 13943 46 12399 47 10992 48 9963 49 9239 50 8302 51 7598 52 6673 53 6065 54 5493 55 5100 56 4676 57 4215 58 3985 59 3697 60 3305 61 3100 62 2950 63 2753 64 2505 65 2333 66 2149 67 2019 68 1869 69 1805 70 1683 71 1752 72 1591 73 1454 74 1383 75 1269 76 1219 77 1196 78 1205 79 1135 80 1061 81 952 82 930 83 931 84 837 85 853 86 824 87 829 88 790 89 779 90 712 91 699 92 742 93 697 94 634 95 607 96 652 97 598 98 579 99 560 100 516 101 486 102 474 103 501 104 497 105 517 106 489 107 477 108 488 109 460 110 426 111 439 112 429 113 388 114 375 115 399 116 374 117 374 118 350 119 333 120 340 121 315 122 304 123 275 124 285 125 276 126 277 127 292 128 288 129 264 130 282 131 265 132 264 133 256 134 222 135 213 136 191 137 193 138 169 139 193 140 170 141 179 142 181 143 178 144 183 145 151 146 176 147 180 148 186 149 174 150 169 151 161 152 150 153 137 154 145 155 136 156 129 157 142 158 145 159 140 160 120 161 127 162 111 163 100 164 117 165 98 166 109 167 93 168 105 169 103 170 107 171 103 172 85 173 89 174 81 175 79 176 96 177 93 178 65 179 74 180 70 181 71 182 82 183 74 184 80 185 63 186 73 187 72 188 94 189 74 190 84 191 70 192 55 193 73 194 65 195 74 196 68 197 65 198 56 199 60 200 70 201 51 202 65 203 49 204 41 205 45 206 36 207 35 208 43 209 37 210 34 211 32 212 47 213 36 214 33 215 46 216 39 217 38 218 26 219 33 220 32 221 45 222 37 223 33 224 33 225 28 226 33 227 36 228 27 229 31 230 34 231 24 232 32 233 26 234 33 235 23 236 29 237 24 238 26 239 23 240 23 241 33 242 17 243 19 244 24 245 19 246 16 247 14 248 16 249 9 250 1948