#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00519/HGDP00519.cram --algo AlignmentStat HGDP/HGDP00519/QCmetrics/HGDP00519.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	308220910	308220910	1.000000	0	307748280	0.998467	45895587898	287115881	43082978239	41895042442	0.000000	0.005528	0.004746	0.000225	151.000000	305485709	0.992648	0	0.499896	0.022356	0.000005	
SECOND_OF_PAIR	308220910	308220910	1.000000	0	305509847	0.991204	44108098824	283929636	41470403935	37469297917	1.000000	0.015370	0.014666	0.000212	151.000000	305485709	0.999921	0	0.499530	0.024643	0.001310	
PAIR	616441820	616441820	1.000000	0	613258127	0.994835	90003686722	571045517	84553382174	79364340359	0.000000	0.010351	0.009611	0.000219	151.000000	610971418	0.996271	0	0.499714	0.023496	0.000657