#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00520/HGDP00520.cram --algo AlignmentStat HGDP/HGDP00520/QCmetrics/HGDP00520.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	447421740	447421740	1.000000	0	447062037	0.999196	66798529901	420080256	63078657995	61579110533	0.000000	0.005091	0.004452	0.000214	151.000000	444933364	0.995239	0	0.499983	0.019098	0.000002	
SECOND_OF_PAIR	447421740	447421740	1.000000	0	444964010	0.994507	64958847649	416918101	61459111752	56605633163	1.000000	0.012851	0.012213	0.000202	151.000000	444933364	0.999931	0	0.499501	0.020479	0.000547	
PAIR	894843480	894843480	1.000000	0	892026047	0.996851	131757377550	836998357	124537769747	118184743696	0.000000	0.008916	0.008282	0.000208	151.000000	889866728	0.997579	0	0.499743	0.019787	0.000274